


Том 57, № 5 (2016)
- Год: 2016
- Статей: 31
- URL: https://bakhtiniada.ru/0022-4766/issue/view/9729
Article
Complexes of α-, β-, and γ-cyclodextrins with nitrophenols: A theoretical study of the structure and energy
Аннотация
Detailed quantum mechanical calculations of the interaction of cyclodextrin (α-, β-, and γ-CD) with 4-nitrophenol (I), 4-nitro-2,6-dimethylphenol (II), 4-nitro-3,5-dimethylphenol (III), and their anions (IVVI) with the formation of intercalation complexes are carried out for the first time. The calculations of the compounds are performed within the density functional theory by the hybrid Becke–Lee–Yang–Parr (B3LYP) method with LanL2DZ basis sets. For the α-CD+III and α-CD+VI complexes it is shown that a nitrophenol molecule of III and a nitrophenolate anion of VI are not contained in the α-CD torus, which agrees with the experimental equilibrium constants. It is found that the calculated equilibrium constants of the formation of guest–host complexes with phenolate anions are much larger than those of neutral molecules. The most stable CD complexes with nitrophenols and their anions should be expected for γ-CD. The β-CD complexes when the guest enters into the host cavity are formed only with compounds I, V, and VI.



Quantum chemical simulation of homopolycondensation of aromatic o-ketocarboxylic acid pseudochloroanhydrides
Аннотация
Within the supermolecule theory, the intermolecular interaction of a monomer, a catalyst, and a solvent involved in the polycondensation of aromatic o-ketocarboxylic acid pseudochloroanhydrides is simulated. A transition state is found in the dimerization reaction of the simplest representative of the class of 3-chloro-3-phenylphthalylidene monomers under study. It is established that a solvent molecule (nitrobenzene) can coordinate through the functional chlorine atom of 3-chloro-3-phenylphthalylidene, thus hindering the formation of the active center, and hence, the growth of the polymeric chain. As a rule, in the presence of nitrobenzene the activation energy of the dimerization reaction of 3-chloro-3-phenylphthalylidene slightly lowers as compared to that in the gas phase.



Harmonic force field of a system of bound atoms
Аннотация
On the example of a simple mechanical model (a linear chain of three bound atoms) it is shown that the equilibrium conditions of forces and force moments completely determine the linearly elastic properties of the structure and make it possible to find the number of free parameters of the quadratic force field.



Structures and magnetic properties of Nin (n = 36-40) clusters from first-principles calculations
Аннотация
A genetic algorithm (GA) coupled with a tight-binding (TB) interatomic potential is used to search for the low-energy structures of medium-sized Nin (n = 36-40) clusters. Structural candidates obtained from our GA search are further optimized with first-principles calculations. The medium-sized nickel clusters ranging from 36 to 40 atoms are found to favor the double-icosahedron-based structures with a Ni7 core (a pentagonal bipyramidal structure) except Ni38 cluster. The lowest-energy structure of Ni38 can be considered to be a magic cluster, which is a typical face-centered cubic structure with large stability and magnetic moment.



Experimental and theoretical characterization of Fe2Cr trinuclear-oxo-centered complex with a CF2ClCOO– bridge
Аннотация
In this work, an atrinuclear-oxo-centered complex of the CrFe2 type with the CF2ClCOO– bridging ligand is newly synthesized. The complex is characterized by experimental and theoretical methods. The optimized geometry and theoretical vibrational frequencies are computed using the density functional theory (DFT) method. Also, the AIM analysis was applied to study changes in topological parameters such as the electron density at critical points of all the bonds of the complex. In the optimized geometry of the complex, three metal ions form a trigonal-planar structure with a μ3-O atom in its center. Each of M3+ metal ions has an octahedral coordination environment of oxygen atoms. The DFT results are in agreement with the experimental ones, confirming the validity of the optimized geometry for the complex.



Structure and some physicochemical properties of carbon and silicon phases with a LA3 diamond-like lattice
Аннотация
The structures and properties of two diamond-like C-LA3 and Si-LA3 phases with crystallographically equivalent atomic sites are calculated by density functional theory with the exchange-correlation potential in the generalized gradient approximation (DFT-GGA). For these phases the structural characteristics, cohesion energies, densities of states, and bulk moduli are determined and powder diffraction patterns are calculated. It is found that the cohesion energies, band gaps, and bulk moduli of C-LA3 and Si-LA3 phases are smaller than the corresponding values of cubic diamond and silicon. Possible methods to obtain experimentally diamond-like C-LA3 and Si-LA3 phases are also analyzed in the paper.



A quantum chemical NMR study of branched and unbranched fluoropolymers
Аннотация
The work demonstrates the results of quantum chemical calculations of 19F and 13C NMR spectra of model fluorocarbon CnF2n+2 molecules with various configurations and hydrocarbon chain molecules. The possibilities to determine the chain length, formation of branches, identification of fluorine substitution for hydrogen during the fluorination of hydrocarbon paraffins and polymers are discussed.



Bismuth-containing fluoride glasses
Аннотация
The example of bismuth-containing glasses based on InF3 and ZrF4 is used to consider the effect of bismuth on glass formation, properties, and structure and the appearance of broadband luminescence at low wavelengths in the IR spectra of fluorozirconate glasses.



Proton state in hydrated fluoro-substituted brownmillerites Ba2In2O5–0.5yFy∙nН2О
Аннотация
Solid solutions Ba2In2O5–0.5yFy with the structure of brownmillerite are studied by IR and 1Н MAS NMR spectroscopy. During the fluorine doping, the nearest oxygen environment of indium atoms is distorted and a part of In–O bonds is shortened. It is shown that partial fluoride ion substitution for oxygen atoms results in an increase in the proton mobility in hydrated Ba2In2O5–0.5yFy∙nН2О phases.



Features of the ion mobility and phase transitions in hexafluoro complex compounds of tantalum(V), niobium(V), and titanium(IV) with the tetramethylammonium cation
Аннотация
19F, 1H NMR and DSC methods are used to study the ion mobility and phase transitions in hexafluoro complex compounds of tantalum(V), niobium(V), and titanium(IV) with the tetramethylammonium cation. A transformation of the NMR spectra observed in a temperature range 77(130)-450 K is found to be associated with a change in the type of ion motions in the anion and cation sublattices of the studied compounds. In a temperature range 170-450 K the main types of ion motions are isotropic reorientations of TaF6, NbF6, TiF6 octahedra and tetramethylammonium ions. Two endothermic effects with the maxima at 232.5 K and 256.5 K for [N(CH3)4]TaF6 and 235 K and 250 K for [N(CH3)4]NbF6, which are observed in the DSC curve in the range 170-400 K correspond to phase transitions that have almost no effect on the NMR spectral parameters the a temperature range 230-260 K. For the [N(CH3)4]2TiF6 compound, an endothermic effect at 422 K is observed, corresponding to the phase transition from the rhombohedral to the cubic modification.



Synthesis and structure modeling of ZnS based quantum dots
Аннотация
Quantum dots (QDs) based on zinc sulfide are synthesized by a microwave method in an aqueous medium using dioctyl sodium sulfosuccinate (DS) or 4,4′-bipyridine (BP). Based on the analysis of X-ray diffraction profiles the conclusion is drawn that QDs obtained have a structure of cubic zinc blende with an average particle size of 5.6 nm for the ZnSDS sample and 4.8 nm for ZnSBP. Transmission electron microscopy images show the presence of spherical aggregates of particles only for ZnSDS. FTIR data indicate the presence of sulfate ions in both samples; DS remains in the sample, facilitating the QD agglomeration, while BP is effectively washed out. From the optical diffuse reflectance spectra the band gap is estimated, which turns out to be larger than the expected one due to the presence of elemental sulfur in the samples and partial oxidation of the QD surface. The QD structure based on ZnS particles is also modeled in the work. The possibility to employ X-ray absorption near-edge spectroscopy for the verification of atomic structural parameters around zinc sites in QDs based on zinc sulfide is demonstrated.



A method to determine and classify the chirality of the water medium
Аннотация
A new numerical method to determine the chirality of water configurations is developed. It consists in the comparison of matrices composed for both initial configuration and its mirror image based on the information of four bound water molecules. The method developed enables the rapid and unambiguous determination of the chirality of an aqueous system.



Structure of small associates of glycyrrhizic acid with cholesterol in aqueous solution: Molecular dynamics simulation
Аннотация
In a recent work by Zelikman et al.(J. Struct. Chem., 2015, 56(1)), the molecular dynamics simulation of dimers of glycyrrhizic acid (GA) arising from the spontaneous collision of two GA molecules in water is performed. Several relatively stable dimer structures are found, and when a cholesterol molecule is inserted, associates are observed constituting a GA dimer with a cholesterol molecule “stuck” to it. Here, we simulate the associates consisting of three and four GA molecules and a cholesterol molecule. It appears that the cholesterol molecule, as a rule, also locates at the surface of the GA associate. Therewith, the trimers do not form any clear characteristic structures, as dimers do, and the tetramers can be two stuck dimers.



Bulk properties and hydration numbers of components of water–salt, water–urea, and water–urea–salt systems
Аннотация
With an increase in the concentration of additives, the hydration numbers of compounds decrease. Thus, in a saturated 54.6% solution, urea loses approximately 3/4 of the initial amount of water, forming an aquacomplex of the composition (NH2)2CO∙H2O. In a supersaturated 44% solution, the sodium chloride aquacomplex is dehydrated by 2/3, and in a supersaturated 67% solution, sodium sulfate is dehydrated by 5/6. The density of these solutions is 1.354÷1.360 g/cm3 (44% NaCl) and 1.800÷1.849 g/cm3 (67% Na2SO4). In a saturated urea solution, NaNO3, NaCl, and Na2SO4 complexes lose 53÷55% of hydration water. It is shown that the interactions in the binary water–urea system somewhat increase the hydration number of the salts (structural hydration). The hydration water density, a structurally important characteristic, increases in the series of solutions of urea, NaNO3, NaCl, and Na2SO4. In the same series of additives, the excess volume of binary water–urea and water–salt systems becomes more negative.



In situ powder X-ray diffraction study of the process of NiMoO4–SiO2 reduction with hydrogen
Аннотация
An interest in NiMoО4–SiO2 reduction stems from its promising use as catalysts for hydrodeoxygenation and hydrodesulfurization processes. The work exploits in situ X-ray diffraction to investigate phase transformations during NiMoO4–SiO2 reduction with hydrogen in a temperature range of 30-700°C. The α-NiMoО4 reduction is shown to proceed in two stages. In the first stage, at 400-500°C, an intermediate state (Ni,Mo,□)O mixed oxide and Ni1–xMox form. In the second stage, above 650°C, two solid solutions based on the Mo and Ni structures form. The structure of the intermediate state is refined by the Rietveld method. It is demonstrated that the Ni–Mo mixed oxide forms based on the NiO structure, which contains a certain number of cation vacancies.



Structure and thermal properties of a tungsten sulfide cluster with thiourea ligands
Аннотация
The reaction of [W3S4(H2O)9]4+ with thiourea (tu) in hydrochloric acid produces a new cluster complex [W3S4(tu)8(H2O)]Cl4∙2H2O containing coordinated thiourea. The complex is characterized by elemental analysis, thermogravimetry, IR, NMR, UV-Vis spectroscopy, and mass spectrometry. The crystal structure is determined by X-ray analysis. The thermal decomposition of [W3S4(tu)8(H2O)]Cl4∙2H2O on heating from 20°С to 700°С in He gives WS2, identified by the X-ray diffraction pattern. DFT calculations for [W3S4(tu)8(H2O)]4+ show that HOMO has a comparable contribution from metal- and ligand-centered atomic orbitals.



Characterization, luminescent properties, crystal structure determination, and thermal properties of [Tl(Ph2phen)Cl3(DMSO)]
Аннотация
The new mixed-ligand complex of [Tl(Ph2phen)Cl3(DMSO)] (1) is obtained from the reaction of TlCl3∙4H2O with 4,7-diphenyl-1,10-phenanthroline (Ph2phen) in a methanol solution. Suitable crystals of 1 are obtained for the X-ray diffraction measurement by methanol diffusion into a DMSO solution. This complex is characterized by spectral methods (IR, UV-Vis, 1H NMR, and luminescence), elemental analysis, thermal analysis (TG, DTA), and single crystal X-ray diffraction.



Sonochemical and solvothermal synthesis of methanol {2-[(2-hydroxy-1,1-dimethyl-ethylimino)-methyl]phenolato}-dioxidomolybdenum(VI) complex and its decomposition to MoO3 nanoparticles
Аннотация
As a new precursor to prepare nano molybdenum trioxide, methanol {2-[(2-hydroxy-1,1-dimethylethylimino)-methyl]phenolato}dioxidomolybdenum(VI) complex (1) with the Schiff base ligand (H2L) is synthesized by two different methods: solvothermal and sonochemical. Nanoparticles of 1 are obtained by one-pot solvothermal treatment of methanolic solutions of the ligand and di-oxomolybdenyl acetylacetonate at 150°C for 24 h and for improving the quality of nanostructures by sonochemical method with two types of solvents, different concentrations of initial reagents and also different sonication times. The thermal stability of nanosized compound 1 is studied by thermal gravimetric (TG) analysis and differential scanning calorimetry (DSC). Nanoparticles of orthorhombic α-MoO3 are obtained by calcination of nanostructures of compound 1 at 700°C. All compounds and the obtained molybdenum trioxide nanostructures are characterized by elemental analysis, FT-IR, UV-Vis spectroscopy, X-ray powder diffraction (XRD), and scanning electron microscopy (SEM).



2-methylpyridinium 5-(2,4-dinitrophenyl)-6-oxo-2-thioxo-1,2,3,6-tetrahydropyrimidin-4-olate: Synthesis, crystal structure, and biological evaluation
Аннотация
The titled complex is synthesized from the ethanolic solutions of 1-chloro-2,4-dinitrobenzene, 2-thiobarbituric acid, and 2-methylpyridine and characterized by spectral and elemental analyses. The single crystal X-ray diffraction results for the complex are compatible with the spectral observations. The titled complex exhibits anticonvulsant activity and reduces all phases of convulsion even at a low dosage. Acute toxicity studies of the complex are performed to understand the safer dose concentration for clinical trials.



Structural characterization of a mixed-ligand complex of copper(II) with 1,10-phenanthroline and the m-aminobenzoate ion
Аннотация
A new copper(II) complex of 1,10-phenanthroline (C12H8N2) and the meta-aminobenzoate ion (m-amb; C7H6NO2−), having the formula Cu(C12H8N2)(C7H6NO2)Cl∙0.5H2O, is prepared and characterized by elemental analysis, IR spectroscopy, and single crystal X-ray diffraction. The structure is built up from monomeric units in which the coordination environment around the metal ion is a square plane arising from a bidentate 1,10-phenanthroline molecule, a monodentate m-amb anion, and a chloride ion. A very long (Cu–N = 2.856(5) Å) bond to the nitrogen atom of an adjacent m-amb ion generates [101] polymeric chains in the crystal. The crystal structure is consolidated by N–H∙∙∙O and O–H∙∙∙O hydrogen bonds and C–H∙∙∙O, C–H∙∙∙Cl, and aromatic π–π stacking interactions. Crystal data: C19H15ClCuN3O2.5, Mr = 424.33, monoclinic, P21/n (No. 14), a = 9.8200(5) Å, b = 10.9291(7) Å, c = 16.3803(9) Å, β = 105.293(3)°, V = 1695.74(17) Å3, Z = 4, R(F) = 0.043, wR(F2) = 0.122.



Analysis of spin-polarized solutions in the basis set of paired orbitals
Аннотация
This work is a brief review of the authors’ applications of Löwdin–Amos–Hall paired orbitals for the analysis of spin-polarized DFT solutions. The possibilities of this approach are demonstrated on the example (1) of models of Fe(III) hydroxocomplexes with two forms of the terminal oxo center, which are involved in the detachment of methane hydrogen, and (2) models of vanadium oxide experiencing the dissociation of the vanadyl group.



Brief Communications
Theoretical investigation of the spectroscopic constants of aluminum carbide in the ground state
Аннотация
The previous multireference configuration interaction (MRCI) results show that the ground state 4Σ– of the AlC molecule is basically single configurational in nature. In this paper, the potential energy curve (PEC) of 4Σ– is calculated with the Brueckner coupled-cluster doubles with perturbative triple and quadruple corrections [BD(TQ)]. Basis set extrapolations with the correlation-consistent basis sets are performed. The efficiency and precision of the methods with different basis sets are compared. The calculated spectroscopic constants are in excellent agreement with the experimental ones. Our results reveal that the correlation from higher order excitations than doubles is very important for this system.



Geometries and properties of the heterobimetallic phosphido-bridged complex:
Аннотация
Geometries and properties of the
complex are investigated theoretically through HF and DFT methods. Computational results reveal that the most accurate structural parameters can be predicted at the B2PLYP/SDD level of theory. AIM and NBO analyses are performed to investigate the nature of the Mo–W and the metal-carbonyl interaction in . It is confirmed that there is a Mo–W bond and a semi-bridging carbonyl group in the complex. The formation of the Mo–W bond accompanies the dominant charge transfer interactions: BD(1)Mo1–W2 → BD*(1)Mo1–W2 and BD(2)Mo1–W2 → BD*(2)Mo1–W2. The real interaction between W and the CO ligand coordinated to molybdenum explains the observed IR ν(CO) band at 1876 cm–1 at room temperature and δ(13CO) at 218.69 ppm at 210 K.


Proton acceptor abilities of heterocyclic compounds determined by stretching vibration bands of the N–H groups of associated molecules
Аннотация
Proton acceptor abilities of some heterocyclic compounds of the pyrrole series are determined by data on the self-association of molecules. It is demonstrated that a change in the vibrational frequency νас of the N–H group of associated molecules is observed in the transition from pyrrole to other compounds of this series. This change in the frequency is due to the inductive effect of the introduced structural fragments on the equilibrium electron configuration of the N–H group.



Crystal structure of a new manganese(III) complex with tetradentate Schiff base N,N′-O-phenylenebis(4-methoxysalicylideneimine)
Аннотация
A new manganese(III) complex [Mn(L)(NCS)] (1) is synthesized from the Schiff base ligand N,N′-O-phenylenebis(4-methoxysalicylideneimine) (H2L: derived from the condensation of 4-methoxy salicylaldehyde with O-phenylene-diamine) with Mn(NO3)2∙4H2O and KSCN in a methanol/water solvent mixture. This complex is characterized by elemental analysis, FT-IR and single crystal X-ray diffraction. It crystallizes in a monoclinic system, with space group P21/c and four molecules in the unit cell (Z = 4). The crystal structure shows [Mn(L)(NCS)] units joined together by the Mn∙∙∙S secondary bonding interaction (SBI) to form infinite zigzag chain structures.



Crystal structures and luminescence properties of a one-dimensional cadmium coordination polymer derived from a flexible bis(imidazole) ligand
Аннотация
A new Cd(II) coordination polymer, namely [Cd(pbmb)(mip)]n (pbmb = 1,1′-(1,3-propane)bis-(2-methylbenzimidazole), H2mip = 5-methylisophthalic acid), is hydrothermally synthesized and characterized by elemental analyses, infrared spectroscopy and single crystal X-ray diffraction analyses. It crystallizes in the triclinic space group \(P\overline 1 \), a = 0.2883(11), b = 11.3409(12), c = 13.2519(14) Å, α = 69.6950(10)°, β = 73.5850(10)°, γ = 63.8100(10)°, V = 1285.8(2) Å3, Z = 2, C28H28CdN4O5, Mr = 612.94, Dc = = 1.583 g/cm3, μ = 0.896 mm–1. In the complex, adjacent dinuclear units [Cd2(pbmb)2] are bridged by mip2– ligands in the μ2-η2, η1 coordination modes to construct 1D ladder-like chains which are additionally assembled into a 2D supramolecular network via C–H∙∙∙π interactions. Moreover, the luminescence properties of the complex are described.



A new Cd(II) coordination polymer constructed by a flexible carboxylate ligand
Аннотация
A new two-dimensional Cd(II) coordination polymer, [Cd(dtb)(CH3OH)]n (H2DTNB = 5,5′-dithiobis(2-nitrobenzoic acid), has been synthesized by solvothermal method, and characterized by elemental analysis, IR and single-crystal X-ray diffraction analysis. The complex crystallizes in the orthorhombic Pbca space group, with a = 15.1365(19) Å, b = 7.6198(10) Å, c = 31.761(4) Å, β = 90°, V = 3663.2(8) Å3, Z = 8, Mr = 538.77, Dc = 1.954 g/cm3 and F(000) = 2128. The final R = 0.040 and wR = 0.0866 for 3603 observed reflections with I > 2σ(I). In the complex, the Cd(II) ion is coordinated with six oxygen atoms from four carboxylate groups of distinct DTNB ligands and one methanol molecule. The adjacent Cd centers are interconnected by the flexible carboxylate ligand to form a two-dimensional (2D) structure.



EPR study of germanium-vacancy defects in diamonds
Аннотация
Diamonds synthesized in the Mg0.9–Ge0.1–C system at high pressure-high temperature (HPHT) conditions are investigated by the EPR and luminescence methods. A new GeV paramagnetic center with the spin S = 1 and D3d symmetry is detected in the EPR spectra of the Ge-doped samples, along with the impurity nitrogen (Р1) and silicon-vacancy defect KUL1 (SiV0) centers. The investigation demonstrates that this new center has a double semi-vacancy structure with the germanium atom in the center. The studied GeV center is in a neutral charge state and is assigned to the 602 nm system in the photoluminescence spectra.



A family of crystal structures with [Pb3(OH)4Co(NO2)3]2+ cations
Аннотация
The structure of two crystalline modifications of [Pb3(OH)4Co(NO2)3](NO2)2 containing tetrahedral [Pb3(OH)4Co(NO2)3]2+ complex cations is studied. Three lead atoms and one cobalt atom are located in the vertices of a distorted tetrahedron with the edges of 3.39-3.92 Å. The distances from the metal atoms to the oxygen atoms belonging to μ3 bridging hydroxo groups are within 1.910-1.956 Å for Co–O and 2.340-2.439 Å for Pb–O. The packing motifs of the crystal structures are analyzed.



Structure and thermal properties of trimethylplatinum(IV)-pivaloyltrifluoroacetonate pyridine
Аннотация
The structure of (CH3)3Pt(ptac)Py (ptac = (CH3)3C(O)CHC(O)CF3) is determined by single crystal X-ray diffraction (XRD) at a temperature of 150 K. The crystallographic data are as follows: space group P21/c, a = 8.5513(2) Å, b = 16.1089(3) Å, c = 14.0877(3) Å, β = 107.4060(10)°, V = 1851.75(7) Å3, Z = 4, R = 0.0365. The structure is molecular; the coordination polyhedron of platinum is a distorted octahedron. The average Pt–O and Pt–CMe distances are 2.149(1) Å and 2.029(5) Å, respectively; the Pt–N distance is 2.179(2) Å, the chelate angle O–Pt–O = 89.77(8)°. The thermal properties of (CH3)3Pt(ptac)Py in the condensed phase are examined by thermogravimetry.



Structure of a coordination polymer based on the bioctahedral [Re12CS14(SO2)3(CN)6]6– cluster anion and ammine complexes of Ni2+
Аннотация
The first coordination polymer containing the [Re12CS14(SO2)3(CN)6]6– cluster anion is obtained and structurally characterized. The [{Ni(NH3)4}3{Re12CS14(μ-SO2)3(CN)6}]∙14H2O compound (1) is obtained by the reaction of NiCl2∙6H2O and K6[Re12CS14(μ-SO2)3(CN)6] in a mixture of NH3/H2O and CH3CN. The compound crystallizes in the triclinic space group P-1 with the unit cell parameters: a = 13.1633(4) Å, b = 14.0464(4) Å, c = 20.7198(7) Å, α = 73.660(1)°, β = 83.101(1)°, γ = 65.102(1)°, V = 3334.6(2) Å3, Z = 2, dcalc = 3.661 g/cm3. The crystal structure is composed of linear polymeric chains located parallel to the b axis and solvate H2O molecules bound by hydrogen bonds.


