卷 86, 编号 5 (2017)

An aerobic hyperthermophilic CO-oxidizing archaeon, Sulfolobus sp. strain ETSY, was isolated and characterized. Presently, it is the only known representative of both hyperthermophiles and Archaea that is capable of aerobic oxidation of CO, a gas of global importance for atmospheric chemistry and of local importance as one of the substrates for the microbial communities of hydrothermal vents. In the genome of Sulfolobus sp. ETSY we found genetic determinants of aerobic CO oxidation: a coxFMSLDE gene cluster and two separately located coxG genes. We also found such gene clusters in the genomes of certain strains of Sulfolobus islandicus and Sulfolobus solfataricus. On the phylogenetic tree of large subunits of aerobic CO-dehydrogenases (CoxLs), these proteins of Sulfolobus representatives formed a compact cluster within one of the branches formed by bacterial form I CoxLs. Thus we argue that the ability to oxidize CO aerobically was acquired by Sulfolobus ancestor from Bacteria relatively late in the evolution, presumably after the formation of the atmosphere with a high oxygen content.

Formation of virulence-associated type I pili in Escherichia coli should be considered as one of the most efficient models for investigating the mechanisms of regulating the heterogeneity of populations of genetically identical microbial cells. The present work focused on the role of alkylhydroxybenzenes (AHBs), density-dependent intercellular regulators, in controlling phase variations in type I pili formation (fimbriogenesis). The tested AHB homologue was C12-AHB; a genetically constructed strain E. сoli dsp250 containing the fimA-lacZ hybrid operon was used. In this operon, the fimA gene encodes the main subunit of the pili protein, and its expression results in β-galactosidase synthesis; pili-forming cells, therefore, become blue on the medium with the Х-gal substrate. Expression of fimA depends on the inversion of the fimS region that is located upstream of it. If the inversion is on, pili formation takes place, if it is off, no pili are formed. An increase in C12-AHB concentration (within the 5 × 10^–5–2 × 10^–4 M range) in the exponential-phase culture of strain dsp250 causes a dose-dependent change in the dominant phenotype that is displayed by up to 98–99% of the cells. Cells with this phenotype form colonies with a blue center and white edges. Up to 60% of the cells with this phenotype assume a metastable state and up to 11% and 44% of them transition to the alternative phenotypes of pili-forming and pili-less cells, respectively. The influence of C12-AHB on off-switching, i.e. the formation of the avirulent phenotype, was observed irrespective of the growth conditions of strain dsp250. Addition of glucose to the LB medium (5 or 10 mg/mL) resulted in catabolic repression via regulation by the cAMP-CNR complex and predictably induced pili formation in 49 and 75% of the cells, respectively. Against this background, C12-AHB caused a dose-dependent decrease in the share of pili-forming cells to 33–61% and an increase in the share of pili-less cells to 32–61%. If glucose was added in excess (2.5, 5 or 10 mg/mL) to the diluted LB/2 medium, pili formation was completely repressed, while C12-AHB still induced the off inversion to the pili-less phenotype in up to 30% of the cells. The conclusion can be drawn that C12-AHB is not involved in the pathway of fimbriogenesis regulation via cAMP. Since C12-AHB functions as an extracellular alarmon (activating the rpoS regulon and the SOS response as shown earlier, see Golod et al., 2009), its mechanism of action apparently involves stress signal transduction. It induces the synthesis of global regulators RpoS and H-NS and of intracellular alarmon (p) ppGpp; these factors are responsible for the on → off inversion and the proliferation of pili-less cells.

Effect of the ions of heavy metals (copper, zinc, and nickel) on growth of and ferrous iron oxidation by extremely acidophilic archaeal strains of the genus Acidiplasma (Acidiplasma sp. MBA-1; A. aeolicum V1^T; and A. cupricumulans BH2^T) was studied. Effect of the metals depending on their concentration was studied within the range from 5 to 1000 mM. All studied strains were able to oxidize iron in the presence of the highest tested heavy metal concentrations (1000 mM). All metal ions had, however, a noticeable inhibitory effect both on both growth and on iron oxidation. The lowest concentrations of copper, zinc, and nickel partially suppressing microbial growth were determined (5, 10, and 5 mM, respectively). These findings are of interest, since almost no literature data on resistance of Acidiplasma archaea to heavy metals are available, although these prokaryotes are among the most important groups of microorganisms used in biohydrometallurgy.

Effect of nanoparticles of different nature on development of the populations of top and bottom fermentation brewers’ yeasts (Saccharomyces cerevisiae) on various media and on ethanol accumulation during wort fermentation was studied. In some cases the presence of nanoparticles in the medium was shown to affect the monitored parameters, primarily the yeast cell titer. Direction and intensity of this effect depend on a number of factors: nanopreparation kind and concentration, medium composition, and cultivation conditions. Inhibition of development of yeast populations was most pronounced in the presence of the silver nanopreparation, while zinc nanoparticles and zinc oxide nanopreparation had the least effect. At the same time, specific concentrations of some nanoparticles stimulated growth of the population and yeast metabolism.

The sensitivity of MDR (multi drug resistant) strains of Stenotrophomonas maltophilia, Acinetobacter baumannii, and Pseudomonas aeruginosa to essential oils and their individual components was studied; bacteriostatic and bactericidal concentrations of 16 substances were determined. Crimean rose oil exhibited the highest activity, with the minimum inhibitory concentration of 1.95 μL/ mL. Growth of bacterial batch cultures in the presence of subinhibitory concentrations of essential oils or their individual components was studied. Kinetic models analysis revealed positive correlations of growth characteristics of the studied bacteria the effects of essential oils (p-level < 0.05). Correlations between lag phase duration and the death of bacterial cultures and correlations between the concentration of linalool (a component of essential oils) and the degree of growth suppression for S. maltophilia and A. baumannii were revealed.

Immobilization of phototrophic microogranisms: microalgae (MA) and cyanobacteria (CB) on polyethylenimine (PEI)-based sorbents was studied. For this purpose, 3 insoluble porous polymeric materials were synthesized by cross-linking of PEI with epichlorohydrine and immobilization of PEI on the surface of styrene–divinylbenzene copolymer. The sorbent on the basis of cross-linked PEI was also alkylated with hexadecyl bromide to achieve hydrophobicity of its surface. The analysis of kinetics and efficiency of immobilization assessed for the model MA and CB cultures revealed the significant difference in the sorption activity of different types of sorbents depending on their synthesis procedure, chemical composition and hydrophilic-hydrophobic properties of polymeric surface. The hydrophobic sorbent obtained by immobilization of PEI on the surface of styrene–divinylbenzene copolymer characterized by very low sorption activity towards CB and MA cells. The highest immobilization efficiency of phototrophic cells was achieved for the hydrophilic sorbent on the basis of PEI cross-linked with epichlorohydrine, which provided the attachment of 50–70% of cells during 3 h of incubation. The hydrophobic sorbent based on alkylated cross-linked PEI effectively immobilized CB cells, while the colonization of the polymer surface by MA cells was very scarce. The noticed effect is explained by difference in prokaryotic (CB) and eukaryotic (MA) types of surface structures organization. Assessment of photosynthetic activity of immobilized MA cells by pulse-modulated fluorometry showed that hydrophobic sorbents had no toxic effect on the cells, while toxicity of hydrophilic cross-linked PEI-based sorbent was observed only after long-term cultivation ofphototrophic cells with this sorbent.

Abundance and taxonomic structure of yeast communities on the surface and in the tissues of various plants of the Nikitsky Botanical Garden was studied. A total of 22 yeast species were isolated, including rare and new species. Yeast numbers on the studied plant substrates were varied within a broad range (8 × 10²‒2.5 × 10⁷ CFU/g), reaching the maximum in Verbascum thapsus flowers, on the surface and inside the fruits of Rubus sp. and Ficus carica. Epiphytic and endophytic yeast communities of Ficus carica fruits were studied in dynamics, from fruit formation until their complete maturation and senescence. Specific properties of the yeast communities of the Nikitsky Botanical Garden plants and the features of the yeast communities from fig fruits are discussed in the paper.