Predictors of successful molecularly targeted therapy based on comprehensive genomic profiling data

Cover Page

Cite item

Abstract

Aim – to study predictors of successful performance of comprehensive genomic profiling and prescription of molecular targeted therapy for patients with advanced solid tumors.

Material and methods. We performed a retrospective single-center study of data of 104 patients who underwent comprehensive genomic profiling by targeted sequencing in the period of 2019 to 2023. The assessment of clinical significance of the identified genome alterations was performed using the scale for clinical actionability of molecular targets of the European Society for Medical Oncology (ESCAT). Analysis were performed of the mutation spectrum, efficiency of molecular targeted therapy, and its effect on survivability. Methods of logistical regression were used for the statistical analysis.

Results. Comprehensive genomic profiling was successfully performed in 87 patients (83.7%). Potentially targeted alterations were found in 44.8% patients, of which 11 persons received molecular targeted therapy. The main predictors of successful performance of comprehensive genomic profiling were the sufficient volume of tumors and lower number of revisions of biological material. Among the patients who received molecular targeted therapy, the overall median survival in the groups was 58 weeks as compared to the 35 weeks in the group of patients without molecular targeted therapy (р=0.097). In three patients, extraordinary response was noted.

Conclusion. The findings show clinical relevance of comprehensive genomic profiling in personalized treatment of solid tumors. The obtained data emphasize the need for careful selection of patients for comprehensive genomic profiling to improve its efficiency and availability.

About the authors

Polina S. Shilo

I.P. Pavlov First Saint Petersburg State Medical University; Lahta Clinic

Author for correspondence.
Email: polinashilo0@gmail.com
ORCID iD: 0009-0001-1482-4604

MD, oncologist

Russian Federation, Saint Petersburg; Saint Petersburg

Mariya L. Makarkina

Saint Petersburg Clinical Scientific and Practical Center for Specialized Types of Medical Care (Oncology) named after N.P. Napalkov

Email: stepanova100992@mail.ru
ORCID iD: 0000-0001-5331-1206

MD, Cand. Sci. (Medicine), oncologist

Russian Federation, Saint Petersburg

Aleksandr A. Zakharenko

I.P. Pavlov First Saint Petersburg State Medical University

Email: 9516183@mail.ru
ORCID iD: 0000-0002-8514-5377

MD, Dr. Sci. (Medicine), Professor, Head of the Department of Oncology of the Faculty of Postgraduate Studies

Russian Federation, Saint Petersburg

References

  1. Miller KD, Nogueira L, Devasia T, et al. Cancer treatment and survivorship statistics, 2022. CA: A Cancer Journal for Clinicians. 2022;72(5):409-436. doi: 10.3322/caac.21731
  2. Cause-Specific Survival, CSR 1975-2018. National Cancer Institute. The Surveillance, Epidemiology, and End Results (SEER). 2018;2011-2017. URL: https://seer.cancer.gov/archive/csr/1975_2018/index.html
  3. Cifuentes C, Lombana M, Vargas H, et al. Application of Comprehensive Genomic Pro fi ling-Based Next-Generation Sequencing Assay to Improve Cancer Care in a Developing Country. 2023;30(9):1-11. doi: 10.1177/10732748231175256
  4. Hobbs BP, Pestana RC, Zabor EC, et al. Basket Trials: Review of Current Practice and Innovations for Future Trials. Journal of Clinical Oncology. 2022;40(30):3520-3528. doi: 10.1200/JCO.21.02285
  5. Pankiw M, Brezden-Masley C, Charames G. Comprehensive genomic profiling for oncological advancements by precision medicine. Med Oncol. 2024;41(1):1. doi: 10.1007/s12032-023-02228-x
  6. Teuwen L-A, Roets E, D’Hoore P, et al. Comprehensive Genomic Profiling and Therapeutic Implications for Patients with Advanced Cancers: The Experience of an Academic Hospital. Diagnostics. 2023;13(1619):1-14. doi: 10.3390/diagnostics13091619
  7. Tjota MY, Segal JP, Wang P. Clinical Utility and Benefits of Comprehensive Genomic Profiling in Cancer. The Journal of Applied Laboratory Medicine. 2024;9(1):76-91. doi: 10.1093/jalm/jfad091
  8. Mateo J, Chakravarty D, Dienstmann R, et al. A framework to rank genomic alterations as targets for cancer precision medicine: The ESMO Scale for Clinical Actionability of molecular Targets (ESCAT). Annals of Oncology. 2018;29(9):1895-1902. doi: 10.1093/annonc/mdy263
  9. Tredan O, Corset V, Wang Q. Routine molecular screening of advanced refractory cancer patients: An analysis of the first 2490 patients of the ProfiLER study. Journal of Clinical Oncology. 2017;35(18). doi: 10.1200/JCO.2017.35.15_suppl.LBA100
  10. Tsimberidou AM. Initiative for Molecular Profiling and Advanced Cancer Therapy and challenges in the implementation of precision medicine. Current Problems in Cancer. 2017;41(3):176-181. doi: 10.1016/j.currproblcancer.2017.02.002
  11. Tsimberidou AM, Hong DS, Wheler JJ. Precision medicine: Clinical outcomes including long-term survival according to the pathway targeted and treatment period–The IMPACT study. Journal of Clinical Oncology. 2018;36(18). doi: 10.1200/JCO.2018.36.18_suppl.LBA2553
  12. Tuxen IV, Rohrberg KS, Oestrup O, et al. Copenhagen prospective personalized oncology (COPPO)–Clinical utility of using molecular profiling to select patients to phase I trials. Clinical Cancer Research. 2019;25(4):1239-1247. doi: 10.1158/1078-0432.CCR-18-1780
  13. Wheler JJ, Janku F, Naing A. Cancer Therapy Directed by Comprehensive Genomic Profiling: A Single Center Study. Cancer Res. 2016;76(13):3690-3701. doi: 10.1158/0008-5472.CAN-15-3043
  14. Massard C, Michiels S, Ferté C, et al. High-throughput genomics and clinical outcome in hard-to-treat advanced cancers: Results of the MOSCATO 01 trial. Cancer Discovery. 2017;7(6):586-595. doi: 10.1158/2159-8290.CD-16-1396
  15. Trédan O, Wang Q, Pissaloux D, et al. Molecular screening program to select molecular-based recommended therapies for metastatic cancer patients: Analysis from the ProfiLER trial. Annals of Oncology. 2019;30(5):757-765. doi: 10.1093/annonc/mdz080
  16. Tourneau C, Delord JP, Gonçalves A, et al. Le Molecularly targeted therapy based on tumour molecular profiling versus conventional therapy for advanced cancer (SHIVA): a multicentre, open-label, proof-of-concept, randomised, controlled phase 2 trial. The Lancet Oncology. 2015;16(13):1324-1334. doi: 10.1016/S1470-2045(15)00188-6
  17. O’Dwyer P, Gray RJ, Flaherty KT. The NCI-MATCH trial: lessons for precision oncology. Nature Medicine. 2023;29:1349-1357. doi: 10.1038/s41591-023-02379-4

Supplementary files

Supplementary Files
Action
1. JATS XML
2. Figure 1. Overall survival depending on the administration of molecularly targeted therapy.

Download (900KB)

Copyright (c) 2025 Shilo P.S., Makarkina M.L., Zakharenko A.A.

Creative Commons License
This work is licensed under a Creative Commons Attribution 4.0 International License.

Согласие на обработку персональных данных

 

Используя сайт https://journals.rcsi.science, я (далее – «Пользователь» или «Субъект персональных данных») даю согласие на обработку персональных данных на этом сайте (текст Согласия) и на обработку персональных данных с помощью сервиса «Яндекс.Метрика» (текст Согласия).