


Vol 71, No 1 (2016)
- Year: 2016
- Articles: 17
- URL: https://bakhtiniada.ru/0027-1314/issue/view/9908
Article
Structure and stability of fluoroquinolone-(2-hydroxypropyl)-β-cyclodextrin complexes as perspective antituberculosis drugs
Abstract
The formation of host–guest complexes of fluoroquinolones (FQs), such as levofloxacin, ofloxacin, and moxifloxacin with (2-hydroxypropyl)-β-cyclodextrin (HP–β–CD) was studied by spectroscopic methods. The stoichiometry and dissociation constants of the inclusion complexes were determined. The formation of complexes of FQs with HP–β–CD was confirmed by the solubility studies, the UV and FTIR spectra and the equilibrium dialysis. The use of the complex of levofloxacin with HP–β–CD leads to the prolonged release of the former observed in the dialysis experiments. The formation of inclusion complexes makes it possible to increase the solubility of FQs by two to five times. The research may provide a basis for the development of new FQ-containing drugs involving HP–β–CD as a nanocarrier system.



Lytic enzymes of staphylococcal phages: Correlation between secondary structure and stability
Abstract
Lytic enzymes of bacteriophages K, phi11, and phi80α can lyse (destroy) cells of antibiotic-resistant strains of Staphylococcus aureus, which makes these enzymes promising antimicrobial agents. The stability of recombinant lysins of phages K, phi11, and phi80α was investigated under the conditions of storage and functioning, and the correlation between the stability and the secondary structure of the enzymes was found. It has been shown that the lower the content of disordered structures in the enzyme molecules, the greater the stability (half-inactivation time) of the lysins. At the storage temperature, the beta-structural lysin of phage phi11 shows the highest stability, while the phage K lysin with an alpha-helical structure and the phi80α lysin with a disordered secondary structure are less stable.



Modeling hydrolysis of the cyclic dimeric guanosine monophosphate by phosphodiesterases
Abstract
The structures of intermediates of the reaction of enzymatic hydrolysis of the cyclic dimeric guanosine monophosphate are computed by using the quantum mechanics/molecular mechanics (QM/MM) method. Tentative mechanisms of transformations at the active site of catalytic domains of phosphodiesterases are suggested based on the results of simulations.



Production of chiral matrices with hybrid silver–thiocholesterol nanosystems and study of their properties
Abstract
A new type of chiral matrix based on silver–thiocholesterol hybrid nanosystems adsorbed on silica gel has been proposed. The molar ratio of stabilized thiocholesterol (L) ligand and silver (Ag) was found to have little effect on the size of the resulting silver nanoparticles (SNPs). The average diameter of SNPs was 2.7 ± 0.4, 2.2 ± 0.4, and 2.1 ± 0.6 nm upon the ratios Ag: L = 1: 5, Ag: L = 1: 2, and Ag: L = 1: 0.5, respectively. The resulting chiral matrices possess enantioselectivity relative to the 1,1’-binaphthyl-2,2’-diamine (BNDA) and trifluoroanthranyl ethanol (TFAE) optical isomers. The TFAE optical isomers were successfully separated using thin layer chromatography (α = 1.56).



Modeling GTP hydrolysis in RasGAP protein complex
Abstract
Fragmented molecular orbitals and combined quantum mechanics–molecular mechanic methods are applied to calculate the geometry configurations and relative energies of the intermediates of GTP hydrolysis in a RasGAP protein complex. It was proved that the hydrolysis of the GTP P–O bond results in the formation of inorganic phosphate H2PO4- and the tautomerization of the side chain of Gln61 to the imide form.



Optimization of silicon dioxide surface functionalization protocol for designing the receptor layer of a biosensor for detecting explosives
Abstract
The development of the receptor layer of the biosensor for detecting explosive compounds is described. The covalent modification has been chosen for immobilizing E. coli nitroreductase on the gate oxide of the ion-sensitive field effect transistor (ISFET) that is comprised of silicon dioxide. The self-assembled monolayer technique has been used for immobilization. This method assumes the usage of different silanes and spacer molecules for activating the surface of SiO2. Two different immobilization strategies have been compared, one using asymmetric spacers (3-maleimidobenzoic acid N-hydroxysuccinimide ester (MBS) and 4-(4-maleimidophenyl)butyric acid N-hydroxysuccinimide ester (SMPB)) and another using a symmetric glutaric dialdehyde linker both accompanied by appropriate silanes. For the first method, the dependence of functionalization efficiency on silane concentration has been studied. The sufficient density of enzyme molecules on the surface of SiO2 has been achieved at a concentration of silane of 0.0015%. The type of asymmetric linker has no influence on immobilization efficiency. The method implying glutaric dialdehyde results in higher activity of the immobilized enzyme. For this method, the immobilization procedure has been optimized. The method has been adapted for immobilization of E. coli nitroreductase inside the channel of a microfluidic system on the surface of ISFET. For this purpose, (3-aminopropyl)triethoxysilane (APTES) has been changed to the corresponding silatrane, and the concentration of the enzyme has been increased to 30 μg/mL. The optimized procedure has been successfully used to develop a biosensor for detecting explosives.



Conformational fingerprinting of angiotensin-converting enzyme in the blood in health and disease
Abstract
The binding pattern of the set of 16 monoclonal antibodies to the different epitopes on the surface of two domains of angiotensin-converting enzyme, i.e., conformational fingerprinting, allows to reveal in blood the presence of an enzyme that is not produced by lung endothelial cells, but rather by other cells, e.g., Gaucher’s cells and sarcoid granuloma cells. The existence of angiotensin-converting enzyme with changed conformation in the blood of patients with uremia has been shown; this enzyme was characterized by enhanced activity towards angiotensin I and decreased ability to be inhibited by specific inhibitors. The prospects of discovering conformationally changed enzyme in blood of patients with atrial fibrillation have also been discussed.



Conversion of C19–C38n-paraffins into components of kerosene and diesel fuels on Pt-containing amorphous aluminosilicate
Abstract
The behavior of Pt-containing catalysts based on mesoporous amorphous aluminosilicate in the process of hydroconversion of C19–C38n-paraffins with the goal to produce diesel and kerosene fractions with improved cold flow properties was investigated. These systems were characterized by high efficiency and selectivity in the process of producing diesel and kerosene fractions. A 91% degree of conversion was achieved with a yield of liquid hydrocarbons of 76% (320°C, volume feed rate 0.5 h–1, molar ratio hydrogen: feed = 600: 1, pressure 50 atm). The initial freezing point of the isolated kerosene fraction was below minus 50°C, and the cold filter plugging point of the diesel fraction was minus 34°C.



Designing a system to test for the presence of any nontelomeric nucleotide at the 3′-chromosomal end
Abstract
The number of telomeric repeats in telomeres correlates with the proliferative potential of eukaryotic cells. The lengthening of telomeres and telomerase activity are regulated in several ways. One of these mechanisms is based on the elongation of the 3′-chromasomal end of an additional nucleotide that is not a part of the telomeric repeat motif. This study presents an approach to testing for the presence of an additional nontelomeric nucleotide at the 3′-end of the G strand of chromosomes. The applicability of this method is demonstrated for thermotolerant yeast H. polymorpha. The possibility of modifying the method to test for the presence of an additional nucleotide at the 3′-end of the chromosomes of other organisms is discussed.



Comparative study of strategies for antibody immobilization onto the surface of magnetic particles in pseudo-homogeneous enzyme immunoassay of aflatoxin B1
Abstract
Pseudo-homogeneous enzyme immunoassay (EIA) of aflatoxin B1 (AFB1) was accomplished using anti-AFM1 monoclonal antibodies conjugated with magnetic particles (MPs). The assay includes the concentration of AFB1 from the test sample on the surface of the MP-antibody conjugate, the binding of the AFB1-peroxidase conjugate to free sites of the antibodies, the separation of the complexes that formed from unreacted components by means of magnetic field, and the evaluation of the enzymatic activity of MP-bound peroxidase. A comparative study of antibody conjugates, which were prepared by three different methods, namely, by physical adsorption on native MP and covalent binding to oleic acidor polystyrene-coated MPs, was performed. For these conjugates, the detection limits of EIA for AFB1 are 2.6, 0.4, and 0.6 ng/mL, respectively. The advantages of the pseudo-homogeneous EIA format as a tool for the highly sensitive control of toxic contaminants in food are the shorter time of incubation of immunoassay reagents (5 min; the total assay time is 20 min) and the possibility of concentrating the analyte from the test samples.



Separation of water-soluble vitamins on silica modified with L-cysteine–stabilized gold nanoparticles using HPLC
Abstract
Silica functionalized with 3-aminopropyltriethoxysilane and L-cysteine–stabilized gold nanoparticles has been obtained (SiO2–NH2–Au–L-cysteine). The influence of pH and the content of acetonitrile in the mobile phase on retention and separation selectivity of eight vitamins has been studied. The chromatographic conditions that enable the separation of C, B3, B12, B5 and B1, B2, B6, B10 mixtures of vitamins have been proposed. It has been found that it is possible to separate a mixture of vitamins C, B3, B12, and B5 in 8 min, and a mixture of vitamins B1, B2, B6, B10 in 12 min on the synthesized sorbent SiO2–NH2–Au–L-cysteine in isocratic elution mode.



Modification of membrane materials used in dried blood spot technology by zinc oxide nanoparticles
Abstract
The modification of hydrophilic fiberglass and cellulose membrane materials with zinc oxide has been investigated. The surfaces of zinc oxide nanoparticles was hydrophilized by modification with 3-amino-propyltriethoxysilane. It was shown using methods of Fourier transform IR-spectroscopy and scanning electron microscopy that coating with hydrophilized zinc oxide nanoparticles did not change the structure of glass fibers and membrane material, while the treatment of cellulose-based membrane materials caused irreversible changes in the structure of fibers and the material as a whole.



High throughput screening platform for new inhibitors of protein biosynthesis
Abstract
The search for new antibiotics is an important task, which is of interest for both basic research and health care practices. It is essential to elucidate the mechanism of antimicrobial action during the screening for antimicrobial activity and at the same time be able to test thousands of compounds. A robotic screening system for potential antibiotics developed at the Department of Chemistry at Moscow State University has been described that enables the immediate identification of those that inhibit protein biosynthesis.



Selection of a piezoelectric sensor array for detecting volatile organic substances in water
Abstract
Sensitive coatings for piezoelectric sensors used to assess the presence of anthropogenic volatile organic substances in the equilibrium gas phase over natural water have been selected using an array of measuring elements, and the data have been processed using principal component analysis. Groups of piezoelectric sensors with similar characteristics for substance identification have been determined based on the correlation between piezoelectric sensor responses when vapors of organic substances were detected. The stepby-step optimization of the piezoelectric sensor array has been carried out in order to identify the greatest number of organic compounds (vapors) in the sample. Volatile organic compounds can be identified in their aqueous solutions and natural water using the optimized piezoelectric sensor array.



Solid-state ion-selective electrodes based on ionic liquid solid at room temperature for detecting amino acids
Abstract
An ion-selective electrode based on tetraoctylammonium N-lauroyl sarcosinate ionic liquid, which is solid at room temperature, is responsive to anionic forms of amino acids. Preconditioning in copper sulfate solution and the introduction of more high-melting and hydrophobic ionic liquid (1,3-dihexade-cylimidasolium bromide) allowed the limit of detecting phenylalanine to be lowered by several times (cmin = 2.7 × 10–5 M) and significantly improves the service life of the ion-selective electrode. The possibility was shown for using two ionic liquids for designing ISE with one of them that serves as an inert solid matrix for immobilizing the second one, which in turn ensured the analyte binding and the generation of a potentiometric signal.



Extraction of cadmium, lead, cobalt, copper, and zinc ions from aqueous solutions into hydrophilic–hydrophobic ionic liquids
Abstract
Extraction of cadmium(II), lead(II), cobalt(II), copper(II), and zinc(II) into ionic liquids tetraoctylammonium N-lauroyl sarcosinate and trioctylmethylammonium salicylate is studied. Cadmium(II), lead(II), copper(II) in tetraoctylammonium N-lauroyl sarcosinate and copper(II) in trioctylmethylammonium salicylate are quantitatively extracted from neutral and weakly alkaline solutions in the absence of additional reagents. The effect of the composition of aqueous and organic phases, as well as the contact time, on metal extraction is investigated.



Quantitation of lipid hydroperoxides using enhanced chemiluminescence
Abstract
To determine lipid hydroperoxides, an analytical procedure was proposed based on enhanced chemiluminescence. The analytical system consisted of a lipid, Fe(II), and coumarin C-525, an enhancer of chemiluminescence. Lipid hydroperoxides were determined with spiked solutions using tert-butyl hydroperoxide as an internal standard. The analytical procedure provided a detection limit as low as 164 nM. Verification was performed by iodometric titration. The assay was used to determine total lipid hydroperoxides in food.


