Metagenomic microbial community profiling of Unnai hot spring by Ion-Torrent based shotgun sequencing
- Авторы: Mangrola A.V.1, Dudhagara P.R.2, Koringa P.G.3, Joshi C.G.3, Patel R.K.4
-
Учреждения:
- Department of Biochemistry
- Department of Biosciences
- Department of Animal Biotechnology, College of Veterinary Science and Animal Husbandry
- Department of Life Sciences
- Выпуск: Том 87, № 1 (2018)
- Страницы: 143-146
- Раздел: Experimental Articles
- URL: https://bakhtiniada.ru/0026-2617/article/view/163393
- DOI: https://doi.org/10.1134/S0026261718010113
- ID: 163393
Цитировать
Аннотация
This is the first report on depicting the pioneering microbiota of Unnai hot spring using shotgun metagenome sequencing approach. Community analysis encompassed a total of 688,059 sequences with the total size 125.31 Mbp and 46% G + C content. Sequencing metagenome reported about 992 species belonged to 40 different phyla dominated by Firmicutes (97.49%), Proteobacteria (1.36%), and Actinobacteria (0.31%). In functional analysis, Non-Supervised Orthologous Groups (NOG) annotation revealed the predominance of poorly characterized reads (82.79%). Moreover, the subsystem classification displayed 19% genes assigned to carbohydrates metabolism, 12% genes allocated to clustering-based subsystems, 10% genes belonged to amino acids and its derivatives. The result suggests the huge bacterial diversity which will be useful for further characterizing the economically important bacteria for biotechnological applications.
Ключевые слова
Об авторах
A. Mangrola
Department of Biochemistry
Автор, ответственный за переписку.
Email: avmang@gmail.com
Индия, Anand, Gujarat
P. Dudhagara
Department of Biosciences
Email: avmang@gmail.com
Индия, Surat, Gujarat
P. Koringa
Department of Animal Biotechnology, College of Veterinary Science and Animal Husbandry
Email: avmang@gmail.com
Индия, Anand, Gujarat
C. Joshi
Department of Animal Biotechnology, College of Veterinary Science and Animal Husbandry
Email: avmang@gmail.com
Индия, Anand, Gujarat
R. Patel
Department of Life Sciences
Email: avmang@gmail.com
Индия, Patan, Gujarat
Дополнительные файлы
