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Том 60, № 5 (2019)

Article

Morphotropism of Rare-Earth Orthoborates RBO3

Fedorov P.

Аннотация

A diagram in the coordinates “temperature-ionic radius” is built for polymorphic and morphotropic transitions in a series of REE orthoborates. The stability fields are determined for the structural types of calcite, aragonite, vaterite, pseudo-vaterite, H-LaBO3, and L-SmBO3. The temperatures of some metastable phase transformations are estimated.

Journal of Structural Chemistry. 2019;60(5):679-691
pages 679-691 views

Structural Diversity of Dimer Clusters Based on the Octadecahydro-Eicosaborate Anion

Avdeeva V., Malinina E., Zhizhin K., Bernhardt E., Kuznetsov N.

Аннотация

The work summarizes the data on currently known dimeric boron cluster anions with the general formula [B20H18]2−. Their preparation, structure, and the methods of structural modification are considered. The data on the reactivity of boron dimeric clusters in redox, substitution, complexation, and condensation reactions are presented. The isomerism of dimeric polyhedral boron cluster anions associated with the formation of substituted derivatives and coordination compounds is considered. The methods of reversible transformation of isomers in salts and coordination compounds in solutions and single crystals are discussed.

Journal of Structural Chemistry. 2019;60(5):692-712
pages 692-712 views

A Comparison of NH52+ and CH5+ Ions and Deuterated Variants of NHxD(5− x)2+: Real or Artefactual Rotation?

Monajjemi M.

Аннотация

Protonated NH52+ has unusual vibrational and rotational behavior because its three nonequivalent equilibrium structures have nearly identical energies and its five protons scramble freely, while in the CH5+ structure, five hydrogen atoms are bonded to the carbon atom by sharing eight valence electrons. Although a few theoretical papers have been published on quantum mechanics of those systems. Better understanding requires spectral and conformational analyses. CASSCF (8, 9) calculations with the correlation consistent polarized valence double and triple zeta basis sets are accomplished for estimating the vibrational data and zero-point energies of those two ions. The present results indicate that normal modes agree qualitatively with NHxD(5- x)2+ and one of the normal modes indicates that NH52+ is highly fluxional and has a complex spectrum while the broken N-H bonds are reformed all the time. The spectrum of mode 10 is highly complex with red and some blue shifts. In particular, modes 6 and 12 are attributed to the rapid coupling of the N-H stretching normal mode to motions more closely related to isomerization, i.e., bending or rocking. There have been long debates whether NH52+ has a structure at all or not and if the rotation is real or artefactual.

Journal of Structural Chemistry. 2019;60(5):713-726
pages 713-726 views

Investigation of Lithium-Ion Diffusion in LiCoPO4 Cathode Material by Molecular Dynamics Simulation

Dehghan F., Mohammadi-Manesh H., Loghavi M.

Аннотация

One of the common cathode materials in the lithium ion battery is the olivine structure LiMPO4, where M is one of Co, Mn, Ni, Fe elements or their combination. Due to its high energy density LiCoPO4 is considered as a cathode material in the lithium ion battery. Lithium ion diffusion at the atomic scale is very important for determining the electrode charge/discharge rate-capability. A molecular dynamics simulation method can be used to investigate the lithium ion diffusion in a material from the atomic point of view. In this study, the diffusevity and structural properties of the LiCoPO4 cathode material are investigated by evaluating the mean square displacement curves, radial distribution function plots, and z-density profiles obtained using the molecular dynamics simulation implemented in the DL-POLY software. The results 10−12 m2/s to 10−13 m2/s at different show that the diffusion coefficient of crystalline LiCoPO4 ranges from 10−2 m2/s to 10−2 m/s at different temperatures. By comparing the diffusion coefficient in different directions, it is found that the motion of lithium ions along the [010] channel is significantly more convenient than that along [100] and [001] channels. By substituting other metals, such as iron, nickel and manganese, for cobalt, the transport and structural properties of the resulting material are investigated. The results indicate that the cobalt-containing structure has a more capability for fast charging and discharging.

Journal of Structural Chemistry. 2019;60(5):727-735
pages 727-735 views

Computational Investigation of the Pseudo Jahn–Teller Effect on the Structure and Chemical Properties of Perhaloethene Anions

Mahmoudzadeh G., Ghiasi R., Pasdar H.

Аннотация

The instability of planar structures in [C2X4] (X = H, F, Cl, Br) molecules due to the pseudo Jahn-Teller effect (PJTE) is investigated as an original PJTE study. Optimization and the following frequency calculations in these molecules illustrate that all of these compounds are unstable in high symmetry planar (with D2h symmetry) geometry and their structures are distorted to a lower C2h symmetry stable geometry. Moreover, the vibronic coupling interaction between 2B2g ground and 2Ag excited states via the (2B2g + 2Ag) ⊗B2g PJTE problem is the reason for the symmetry breaking phenomenon and non-planarity in those series. Natural bond analysis (NBO) is used for illustrating the strongest interaction and natural atomic charges of these structures.

Journal of Structural Chemistry. 2019;60(5):736-745
pages 736-745 views

Stability, Electronic, and Structural Features of the Conformers of 2-Methyl-1,3,2-Diheterophosphinane 2-Oxide (Heteroatom = O, S, Se): DFT and NBO Investigations

Nasrolahi M., Ghiasi R., Shafiee F.

Аннотация

In this study, the stability of 2-methyl-1,3,2-diheterophosphinane 2-oxide conformers (heteroatom = O, S, Se) is investigated at the B3LYP/6-311+G(d,p) level of theory. The total energy, dipole moment, the energies of frontier orbitals, and HOMO-LUMO gaps of these molecules are calculated. The NBO analysis is applied to illustrate the hyperconjugative anomeric effect on the conformers. The responsible interactions of this effect are determined. The interaction energy, off-diagonal elements, and the total steric exchange energy (TSEE) of these interactions and Wiberg indices of bond values are estimated. Also, changes in the calculated bond distances are explained based on the natural bond orbital (NBO) analysis.

Journal of Structural Chemistry. 2019;60(5):746-754
pages 746-754 views

Competition Between the Intramolecular Hydrogen Bond and the π-Electron Delocalization in Some RAHB Systems: A Theoretical Study

Rafat R., Nowroozi A.

Аннотация

In the present study, the competition between the intramolecular hydrogen bond (IMHB) and the π-electron delocalization (π-ED) in some derivatives of triformylmethane (TFM) are investigated. In this regard, all of the hydrogen bonded structures are optimized by B3LYP and MP2 methods with the 6-311++G(d,p) basis set. The relative energies clearly predict that the B conformers (cis and trans) are more stable than the A and C ones; B < A < C. This order can be related to their IMHB strength and π-ED. Accordingly, IMHB and π-ED of all hydrogen bonded structures are comprehensively investigated. The IMHB results show that the O™H ⋯ O unit of A conformers is stronger than the corresponding interactions of other forms and is not consistent with the stability order. On the other hand, the π-electron delocalization of B forms are greater than those of A and C ones, which strongly support the stability order. Consequently, in the benchmark systems, the π-electron delocalization is a superior factor in determining the most stable structures.

Journal of Structural Chemistry. 2019;60(5):755-762
pages 755-762 views

Cation Distribution in the Composite Materials of the CaFe2O4-α-Fe2O3 Series

Knyazev Y., Shishkina N., Bayukov O., Kirik N., Solovyov L., Zhizhaev A., Rabchevsky E., Anshits A.

Аннотация

Structured composite materials CaFe2O4-α-Fe2O3 (α-Fe2O3 content is 2–82 wt.%) are obtained with the method of solid-phase synthesis at 1000 °C. The phase composition of the samples is studied using powder X-ray diffraction. It is shown that the content of CaFe2O4 and α-Fe2O3 phases changes linearly, depending on the composition of the starting material. The scanning electron microscopy data indicate the formation of a two-phase system α-Fe2O3-CaFe2O4. The Mössbauer spectroscopy data at room temperature testify the formation of cationic iron vacancies in the CaFe2O4 crystal structure in the absence of α-Fe2O3 structural defects. Cationic vacancies can be formed during the synthesis in the atmosphere of air.

Journal of Structural Chemistry. 2019;60(5):763-771
pages 763-771 views

Prediction of 13C NMR Chemical Shifts of Quinolone Derivatives Based on DFT Calculations

Yu X., Deng J., Chen J., Yang H.

Аннотация

At present, there exists subjectivity in selecting descriptor sets for the quantitative structure property relationship (QSPR) models. A complete set is perfect, in which there is no any element redundant or needed to be added. This paper reports the complete sets of descriptors used to develop QSPR models for 13C NMR chemical shifts (δC parameters) of carbon atoms in quinolone derivatives. These descriptors in the complete sets used are calculated by applying the PBE1PBE functional of density functional theory (DFT) and the 6-311G(2d,2p) basis set. The multiple linear regression (MLR) technique and the support vector machine (SVM) algorithm are, respectively, used to develop linear and nonlinear QSPR models for δC parameters. The four QSPR models have the root mean square (RMS) errors less than 2.0 ppm, which approximately equal one fourth of the errors from the previous model. Further, our models have more samples in the test sets and less descriptors in the models. These results suggest that our four models of δC parameters have better statistical qualities. The feasibility of applying complete sets of descriptors to develop QSPR models for 13C NMR chemical shifts is demonstrated.

Journal of Structural Chemistry. 2019;60(5):772-779
pages 772-779 views

[NiEn3]MoO4: Features of the Phase Transition and Thermal Decomposition in the Presence of Lithium Hydride

Sukhikh A., Khranenko S., Komarov V., Pishchur D., Nikolaev R., Buneeva P., Plyusnin’ P., Gromilov S.

Аннотация

The crystal structural characteristics of the [NiEn3]MoO4 complex salt (En is ethylenediamine) at 90 K are as follows: space group \(P\overline 3 ,\;a = 15.9307\left( 9 \right)\;\acute{\mathring{\mathrm{A}}} ,\;c = 9.9238\left( 6 \right)\;\acute{\mathring{\mathrm{A}}} ,\;V = 2181.1\left( 3 \right)\;{\acute{\mathring{\mathrm{A}}} ^3},\;Z = 6,\;{d_{\rm{x}}} = 1.822\;{\rm{g/c}}{{\rm{m}}^{\rm{3}}}\), Ni-N is \(2.1182\left( {12} \right) - 2.1498\left( {11} \right)\;\acute{\mathring{\mathrm{A}}} ,\) ∠Ni-N-N is 80.76(4)-82.27(4)°. According to the differential scanning calorimetry data in a range from 295 K to 310 K, there is a thermal anomaly with peaks at T1 = 299.6 K and T2 = 304.7 K. The crystal structural characteristics at 320 K are as follows: space group \(P\overline 3 \,1c,\;a = 9.2491\left( 4 \right)\;\acute{\mathring{\mathrm{A}}} ,\;c = 9.9713\left( 4 \right)\;\acute{\mathring{\mathrm{A}}} ,\;V = 738.72\left( 7 \right)\;{\acute{\mathring{\mathrm{A}}} ^3},\;Z = 2,\;{d_x} = 1.794\;{\rm{g/c}}{{\rm{m}}^3}\), Ni-N is \(2.1302\left( {14} \right)\;\acute{\mathring{\mathrm{A}}} \), ∠N-Ni-N is 80.96(8)°. With increasing temperature from 90 K to 320 K a decrease in the average Mo-O distance from \(1.769\;\acute{\mathring{\mathrm{A}}} \) to \(1.725\;\acute{\mathring{\mathrm{A}}} \) is observed in the structure. The comparative analysis of the interionic N-H…O and C-H…O contacts is carried out. The ex situ powder X-ray diffraction study of the formation process of metal and carbide phases by the [NiEn3]MoO4 thermal decomposition in the presence of LiH in the He atmosphere is performed. At the temperature of 1323 K a Mo2C and MoNi4 phase mixture forms in the first minute. With increasing keeping time the Ni2Mo4Cx phase forms.

Journal of Structural Chemistry. 2019;60(5):780-788
pages 780-788 views

A Study of the Crystal Structure of SmCaCo1−xFexO4−δ and Sm0.9Ca1.1Fe1−yCoyO4−δ Solid Solutions

Galayda A., Volkova N., Startseva A., Gavrilova L., Cherepanov V.

Аннотация

Complex oxides with general compositions SmCaCo1−xFexO4−δ and Sm0.9Ca1.1Fe1−yCoyCO4−δ are synthesized using the glycerol-nitrate technique at 1100 °C in air. By powder X-ray diffraction it is determined that SmCaCo1−xFexO4−δ solid solutions exist in a composition range 0 ≤ x ≤ 0.3 and Sm0.9Ca1.1Fe1yCoyO4−δ solid solutions exist in a composition range 0 ≤ y ≤ 0.7. The samples with high concentrations of cobalt ions are found to crystallize in the tetragonal unit cell (space group I4/mmm), whereas the solid solutions enriched with iron ions have the orthorhombic structure (space group Bmab). For all single phase samples the unit cell parameters and volume and the structural parameters (atomic coordinates and bond lengths) are calculated by the full-profile Rietveld method.

Journal of Structural Chemistry. 2019;60(5):789-795
pages 789-795 views

Crystal Structure of (NH4)2VO(SO4)2·H2O

Tyutyunnik A., Krasil’nikov V., Baklanova I., Samigullina R.

Аннотация

Ammonium vanadate(IV) oxosulfate with the composition (NH4)2VO(SO4)2·H2O is synthesized and its crystal structure is investigated. It is found that the compound crystallizes in monoclinic crystal symmetry (space group P21, Z = 2) with lattice parameters: \(a = 4.65037\left( 4 \right)\;\acute{\mathring{\mathrm{A}}} \), \(b = 10.9870\left( 1 \right)\;\acute{\mathring{\mathrm{A}}} \), \(c = 9.5666\left( 1 \right)\;\acute{\mathring{\mathrm{A}}} \), β = 98.6273(5)°, \(V = 483.260\left( 8 \right){\acute{\mathring{\mathrm{A}}} ^3}\), Z = 2. The crystal structure of the compound is composed of VO5H2O octahedra sharing vertices of bridging groups SO4 and making infinite chains parallel to the a axis. In the vertex of the VO5H2O octahedron there is a short terminal vanadyl bond V4+=O with a length of \(1.564\left( 7 \right)\;\acute{\mathring{\mathrm{A}}} \). A water molecule is trans positioned to this group at a distance of \(2.355\left( 6 \right)\;\acute{\mathring{\mathrm{A}}} \). The chains are linked with each other by (NH4)+ ions.

Journal of Structural Chemistry. 2019;60(5):796-802
pages 796-802 views

Crystal Structure And Luminescent Property of a New Two-Dimensional Polymer Based on 1,4-Bis(4-(Imidazole-1-yl)Benzyl)Piperazine

Zhang C., Tao J., Wang J.

Аннотация

A two-dimensional Zn(II) complex [Zn(BIBP)(TBIP)]n (1) (BIBP = 1,4-bis(4-(imidazole-1-yl)benzyl)piperazine, H2TBIP = 5-tert-butyl isophthalic acid) is synthesized and characterized using single crystal X-ray diffraction, IR spectroscopy, and elemental analysis. The single crystal X-ray diffraction analysis reveals that complex 1 is an achiral two-dimensional layer based on 1D left- and right-handed helical [Zn(BIBP)]n2 chains, which are linked by C—H⋯O hydrogen bonds to form a three-dimensional supramolecular framework. Moreover, complex 1 exhibits an emission band at 393 nm (λex = 244 nm).

Journal of Structural Chemistry. 2019;60(5):803-809
pages 803-809 views

Synthesis and Crystal Structure of Nickel(II) and Zinc(II) Complexes with O-Propylxanthate and N, N, N′,N′-Tetramethylethylenediamine

Qadir A., Dege N.

Аннотация

The reaction of NiCl2·6H2O or Zn(CH3CO2)·2H2O with potassium O-propylxanthate (KS2COC3H7) and N, N, N′,N′-tetramethylethylenediamine (tmeda) affords monomeric complexes of the formula [M(S2COC3H7)2(tmeda)] (M = Ni(II) 1; Zn(II) 2). Both complexes are characterized by single crystal X-ray diffraction, elemental analysis, IR spectroscopy. Complexes 1 and 2 crystalize in monoclinic P21/c and I2/a space groups, respectively. Each metal center is ligated by four S atoms from xanthate ligands and two N atoms from tmeda in a distorted octahedral geometry.

Journal of Structural Chemistry. 2019;60(5):810-814
pages 810-814 views

Gadolinium Break in a Series of Three-Dimensional trans-1,4-Cyclohexane Dicarboxylates of Rare Earth Elements

Demakov P., Sapchenko S., Samsonenko D., Dybtsev D., Fedin V.

Аннотация

By a reaction of lanthanide nitrates with trans-1,4-cyclohexane dicarboxylic acid H2chdc in an aqueous medium new coordination polymers with the composition [Ln2(H2O)4(chdc)3] (Ln = Ce (1), Sm (2), Eu (3), Gd (4)) are obtained. Crystallization conditions are optimized with the use of a hexamine-based pH buffer. Compound 1 is additionally characterized by powder X-ray diffraction, elemental and thermogravimetric analyses, and IR spectroscopy. The structure of the obtained compounds is determined by single crystal X-ray diffraction. In a series of isostructural three-dimensional frameworks [Ln2(H2O)4(chdc)3] (Ln = La—Eu, except Pm) a regular change in the structural features is analyzed. The [Gd2(H2O)4(chdc)3] compound has a similar composition but the topology of the three-dimensional network differs from that of the previous ones due to a decrease in the coordination number of metal centers. Heavier lanthanides, starting from Tb3+, and also yttrium(III) do not form compounds with the mentioned composition under similar reaction conditions.

Journal of Structural Chemistry. 2019;60(5):815-822
pages 815-822 views

Crystal Structure of Coordination Polymers Based on Scandium and 2,5-Pyrazinedicarboxylic Acid

Sapianik A., Samsonenko D., Fedin V., Barsukova M.

Аннотация

In the interaction of scandium chloride hexahydrate and 2,5-pyrazinedicarboxylic acid (H2pzc) dihydrate in different solvent mixtures two novel coordination polymers are obtained under solvothermal conditions: [Sc2(dmf)2(H2O)2(pzc)3] (1) and [Sc2(H2O)2(pzc)3]·2CH3CN·H2O (2) (dmf is N,N-dimethylformamide). Crystal structures of compounds 1 and 2 are determined by single crystal X-ray diffraction and supported by elemental and thermogravimetric data and IR spectroscopy. The phase purity of the samples prepared is confirmed by powder X-ray diffraction. It is shown that the coordination environment of the scandium cation and the 2,5-pyrazinedicarboxylate ligand denticity change depending on the composition of a solvent mixture. Compound 1 has a layered structure while in the structure of 2 there is a three-dimensional framework.

Journal of Structural Chemistry. 2019;60(5):823-829
pages 823-829 views

A Comparative Study on the Zinc Metatitanate Microstructure by Ball Milling and Solvothermal Approaches

Al-Hajji L.

Аннотация

The microstructure of an a-TiO2:ZnO system obtained by two different synthesis techniques is investigated. Equimolar a-TiO2:ZnO is subjected to high-energy planetary ball milling as a dry mechanical technique and a solvothermal method as a wet technique for preparing zinc titanates. The investigation is performed by XRD and HR-TEM. The mechanical route results in the formation of ZnTiO3 as a major product accompanied by Zn2Ti3O8 as a minor one. The solvothermal route results in the formation of Zn2Ti3O8 accompanied by traces of zincite. The thermal stability of later zinc titanate is explored under different temperatures and results in a homogeneous amorphous nanocrystalline phase transformation without a compositional change.

Journal of Structural Chemistry. 2019;60(5):830-837
pages 830-837 views

Three New Metal-Organic Coordination Complexes: Crystal Structures and Anticancer Activity in Multiple Myeloma

Yang Y., Yang J., Wang D.

Аннотация

Three new metal-organic coordination complexes, namely [Cu(4,4′-bipy)2(NCS)2]n (I), [Cu(HCOO)2(4,4′—bipy)] (II), and [Cu(2,2′-bipy)2]2(V6O17) (III) (4,4′-bipy and 2,2′-bipy = 4,4′-bipyridine and 2,2′-bipyridine, respectively) are successfully prepared by using two similar pyridine ligands with different orientations of N atoms under different reaction conditions (slow volatilization for I, solvothermal for II and III). Their structures and compositions are characterized by both single crystal X-ray diffraction and elemental analysis. Additionally, the newly synthesized compounds are evaluated to identify the molecular characteristics contributing to their cytotoxicity. They are tested against three human multiple myeloma cells (NCI-H929, MM1S, and MM1R) with the MTT assay.

Journal of Structural Chemistry. 2019;60(5):838-844
pages 838-844 views

Synthesis and Antibacterial Activities of Novel Hg(II) and Zn(II) Complexes of Bis(Thiosemicarbazone) Acenaphthenequinone Loaded to MWCNTs

Abdolhi N., Aghaei M., Soltani A., Mighani H., Ghaemi E., Javan M., Khalaji A., Sharbati S., Shafipour M., Balakheyli H.

Аннотация

This paper describes a series of new polyamides containing bis(thiosemicarbazone) acenaphthenequinone (PA), bis(thiosemicarbazone) acenaphthenequinone zinc (Z-PA), and bis(thiosemicarbazone) acenaphthenequinone mercury (H-PA) complexes loaded onto MWCNTs synthesized via a chemical precipitation method in methanol followed by antimicrobial activity studies on the novel functionalized MWCNTs complexes. These complexes are characterized by FT-IR spectroscopy, powder X-ray diffraction (XRD), scanning electron microscopy (SEM), and transmission electron microscopy (TEM). The antibacterial activity of free PA, Z-PA, and H-PA complexes loaded onto MWCNTs are studied against gram-positive and gram-negative bacteria. The results indicate that the HPA/MWCNT complex is the most effective growth inhibitor against Listeria monocytogenes and Pseudomonas aeruginosa, exhibiting the potential for the use as an antibacterial agent.

Journal of Structural Chemistry. 2019;60(5):845-853
pages 845-853 views

Erratum

Erratum to: Crystal Structure and Luminescent Property of a One-Dimensional Chain Based on 1-(4-Nitrophenyl)-1,2,4-Triazole

Qian J., Wang J., Chen N.

Аннотация

In the original article there was a mistake in the information of the corresponding author. The correct spelling of the names of the authors and their order is: J. Qian, J. Wang*, and N.-N. Chen.

Journal of Structural Chemistry. 2019;60(5):854-854
pages 854-854 views

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